rs46471350 SNP Detail

Summary

• ID
  rs46471350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145879282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTAATTAA TTATTATTGT GTGCAGCCAT GTGTATGGTC
  TGAGAGTCAC ACGTGTGGAG GTCAAGGGTT CATCTCTGAG GAGTCATAGA TAGCTTCCAC
  Y
  GTGGATCCTG GAAATCAAAA TGAGGTCAGC AGGTTTTCCC AGCTCAGTCA CCTCACTGGC
  CAGGAACAAT TATTTTGAAT GCGAGTACCT CAATAAGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133984540	ENSMUSSNP3546535	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322075154	CHEV_6_145882076	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46471350					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145879282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	476 bp proximal
D6Mit200	DNA segment, Chr 6, Massachusetts Institute of Technology 200	1784 bp proximal
Rr641246	regulatory region 641246	475 bp distal
Rr641247	regulatory region 641247	195 bp proximal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	557 bp upstream
Tssr59565	transcription start site region 59565	581 bp upstream