rs46471876 SNP Detail

Summary

• ID
  rs46471876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105073649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGTAAAT GAATAAAATT ATTAATTAAA AAAATAAATT
  CAGGATATGG CTTTGGAGGC AGCTCAGCCA GTATAATCTT TACTAAGCAG TCATGAAGAC
  Y
  TGGCTTTGAT CCTTAACACA CATGTAAAAT TTTAAGCATG ATTGTGATTA TCTGTAATTC
  CAGAGCTAGG GAGCTGGAAA CACGAGGATC TCTGGGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147491309	ENSMUSSNP521580	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323446502	CHEV_10_104674844	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46471876					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105073649 () rs orientation: forward

Symbol	Name	Function Class
Rr212535	regulatory region 212535	552 bp proximal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr95614	transcription start site region 95614	335 bp upstream
Tssr95615	transcription start site region 95615	700 bp upstream