rs46472404 SNP Detail

Summary

• ID
  rs46472404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67002105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGTATG GCCATTAGAA
  GCTCTCGTGT GTCATTGGAT GTTCTGTTTT GCCAAGAAAG TCTTGTTCCC TGTTTTTAAG
  CTCTTAGAAC AATCCCATTT TAGGATATCT TCTATCTGGG CTGGCTTTTC AACAGTTCGC
  AACACGTGCT TTTTTAAAAG ATGACTTATC CTCAAGTTTC CACATTGGGC GCCTCTCTGG
  R
  TCTCCTTTTG GAATGTCCTT GTATCGCTAT CCGATGTCCC TTCTCGTTCA GTTGAGAAGG
  CAGCAGTCCT CATGTCTACT AAGGTATTAA CCACAATGAT GCCAATGGTC AACTGCAAGG
  AAAGCTCTGG GGTGTTGGAA TTCTTCTGTA TCCTGTCTTG TGATGGGTTT CACGAGAGTC
  TAAAGGGAGG AGGAAATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62440208	NES17246768	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46472404					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62440208	NES17246768	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67002105 () rs orientation: forward

Symbol	Name	Function Class
Adra1a	adrenergic receptor, alpha 1a	within coordinates
Gm62844	predicted gene, 62844	within coordinates
Rr293226	regulatory region 293226	105 bp distal
Rr389792	regulatory region 389792	925 bp downstream