rs46472654 SNP Detail

Summary

• ID
  rs46472654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53524120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGGTGC TCTGATAATG
  TCTTCAGCCC TCACCACGGG AACCCCAGTA CATCAAGAGA GGCCAGACGA AGCTGTCACA
  TCCTCTGGGT TTTCTGACAG TCTTTGGTGT CTTCCTCTTG AGTTGAACAG AAGACTCAGA
  AAAGGAAAGA CCTAGAACTT CAGGACTGTG ATGGGCCAAG CTGCAGGGGA AGTTGGAAGG
  Y
  AGCCCAGGCT GGTGCATCAG CCTTTTCCGG GAGCTCAAAG GAGTGTCCAG CCTGCTTCTT
  TGGTAGCTGT TGGTGCCACG GGGCATGGGG GGTGGGTGTC GGGTGGGGCT ATAGCCGATG
  AAAGGCTTGG ACTTGAGTCT CTGAGCTCTT TCCCAATAAG AACCATTTTT TTCCAGTTTC
  TAAGCAGTAG GGAACTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63284337	NES17498550	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46472654					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63284337	NES17498550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53524120 () rs orientation: forward

Symbol	Name	Function Class
Dusp5	dual specificity phosphatase 5	within coordinates
Rr549551	regulatory region 549551	within coordinates
Rr549552	regulatory region 549552	359 bp proximal
Tssr156987	transcription start site region 156987	1868 bp downstream
Tssr156988	transcription start site region 156988	1850 bp downstream
Tssr156989	transcription start site region 156989	1777 bp downstream
Tssr156990	transcription start site region 156990	1747 bp downstream
Tssr156991	transcription start site region 156991	1771 bp upstream
Tssr156992	transcription start site region 156992	1801 bp upstream
Tssr156993	transcription start site region 156993	1826 bp upstream
Tssr156994	transcription start site region 156994	1985 bp upstream