rs46472730 SNP Detail

Summary

• ID
  rs46472730
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79975299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA GAGTTTCCTG AAGAACTACA
  G
  CTCAGAGGGC TTCCGAAAGC GGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148213533	ENSMUSSNP6725450	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325030240	CHEV_15_79921528	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46472730					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79975299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	within coordinates
Gm31134	predicted gene, 31134	within coordinates
Rr312104	regulatory region 312104	within coordinates
Syngr1	synaptogyrin 1	238 bp upstream
Tssr132156	transcription start site region 132156	100 bp upstream
Tssr132157	transcription start site region 132157	222 bp upstream
Tssr135418	transcription start site region 135418	724 bp downstream