rs46472951 SNP Detail

Summary

• ID
  rs46472951
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45237619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTAGAA CCCAAGTCCT
  CATCCTTACT TGACCTGGAA ATATGAAAAT TGGTTACCAT TTTGTTATTA ATTTTTAAAA
  TGGGGGTGGG GTGGGGAGGG TGGTACACTC ATATGGAGGC CAGAAAATAG CCTCCAGGAA
  ATCAGTTCTC TCTACCATGT GGGTTTCAGG AATTGAACTC TCGATTTTTA GGAATGTCAG
  C
  AAGCTCTATG ATTCTCAGAT TCATCTCATC AGCCCTCAAT TCCAGTATCT GTAAAGTGGA
  GCTAACCATG CCAACTAAAA AGAGCCACTA GGAAGTTGAC ATAGGACCAA GAGAGGTGCT
  TCGTTGGCTG TTATATTCAT CAGAACTTGA CCCTCGTGTA TAGTCCCAGG CTTGTTCACT
  TAGTTCCATG ATTGTATGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136409363	ENSMUSSNP4789583	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46472951					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45237619 () rs orientation: forward

Symbol	Name	Function Class
Rr203899	regulatory region 203899	1440 bp distal
Rr203900	regulatory region 203900	453 bp distal
Rr203901	regulatory region 203901	102 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates