rs46473341 SNP Detail

Summary

• ID
  rs46473341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCTATA GGAGACTGTG
  TCATTCACAC CACCAAAAAA TAATATGAAA AAAAGTTTTT AATACAGCTA TGCTGACTCT
  GTAGCTAAGA AAAAGGTTTT AAGAGATTCA TGGAAAAATA GCAAGTCAGT GGTAAGAATG
  TTTAATGTAT TATGAACTTC TTAAGTGGCA CACAGCCTAT TAGGCCAAAA TCACATATAC
  Y
  TTTAAATGCT TAACAAAACA GCTTTGGATT TTATTTCTTA ACAGTATTCT AACTGTTCTG
  TCTTGCTTTC TGTCGCTGTG ATAAAGACCA TGACCAAATG CAGCGTGGGG AGGAGACGGT
  TTATTCGCCT TACACTTCCT GCTCACCATG CCCAGGGAGC TCAGGGCAGG AACTATGACT
  GCTTACTGGC CCACTTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60592247	NES16320174	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46473341					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592247	NES16320174	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	839 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1070 bp upstream
Rr661952	regulatory region 661952	352 bp distal
Rr661953	regulatory region 661953	59 bp proximal
Rr661954	regulatory region 661954	566 bp proximal
Rr661955	regulatory region 661955	575 bp proximal
Rr661956	regulatory region 661956	1250 bp proximal
Tssr80889	transcription start site region 80889	486 bp downstream
Tssr80890	transcription start site region 80890	540 bp downstream
Tssr80891	transcription start site region 80891	1167 bp downstream
Tssr80892	transcription start site region 80892	1235 bp downstream
Tssr80893	transcription start site region 80893	1516 bp downstream