rs46473726 SNP Detail

Summary

• ID
  rs46473726
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGTCTTT TTCAAAATAT TTGTCAAATT GTTCTTTGAT
  GGTTTCATAT TTCTTGCTAA GTGGATCCTC CAGTAAATTA GATGTGAGTG TCAGGATTTT
  C
  CCATTTTGAA TCTGAATGTT CAGCTGATTG TCTAAGTCCA GTACATGACT CCTTAGCTCC
  CAGATCCATT GACTATACAT GGTTTCCAGT TTGCTCATG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145614845	ENSMUSSNP2413571	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322371915	CHEV_7_113649834	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46473726					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105527 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74127	transcription start site region 74127	1976 bp upstream
Tssr74128	transcription start site region 74128	1896 bp upstream
Tssr74129	transcription start site region 74129	1365 bp upstream
Tssr74130	transcription start site region 74130	1316 bp upstream
Tssr74131	transcription start site region 74131	1105 bp upstream
Tssr74132	transcription start site region 74132	929 bp upstream
Tssr74133	transcription start site region 74133	272 bp upstream
Tssr74134	transcription start site region 74134	17 bp upstream
Tssr74135	transcription start site region 74135	30 bp downstream
Tssr74136	transcription start site region 74136	98 bp downstream
Tssr74137	transcription start site region 74137	164 bp downstream
Tssr74138	transcription start site region 74138	194 bp downstream
Tssr74139	transcription start site region 74139	228 bp downstream
Tssr74140	transcription start site region 74140	283 bp downstream
Tssr74141	transcription start site region 74141	683 bp downstream
Tssr74142	transcription start site region 74142	826 bp downstream