rs46473903 SNP Detail

Summary

• ID
  rs46473903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTACGGGCT GTTTTATTCA
  TCTGCAAAAT GATTCCGTGC AGGCCTCCAA AACTGTAATA GGAACTTTCC TTTTCCATCA
  AACTGAGGAG TGGTGAGGTA AACTGCTCTT GGGACTGAAA TAGCTCTGTC TAGTGTCTGG
  TAATGTACTG AACACATACA TAGCGCAGTT ATAAGAAATG TATGAGACCT TCCTTGTCTT
  Y
  GCTCTGTGTG TAAGACGTGT CCCCTGCACC TGTATAGTGG CTGTGGCTTG AATGACTCTC
  AAAGTTACTT CTATACATAC CTCTATGTCC ATTATCGAAT CAGCTCTTCT GACAATTGGA
  AAGAACTCCT ATTCTAAAAG GCAATGGATT CCTTAGATCC TTTCACCTTA TTGTATCCTT
  GTAGGGAAAT GCAAAATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014969	ENSMUSSNP7185763	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46473903					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	444 bp proximal
Met	met proto-oncogene	929 bp upstream
Rr626799	regulatory region 626799	439 bp proximal
Rr626800	regulatory region 626800	603 bp proximal
Rr626801	regulatory region 626801	646 bp proximal
Rr626802	regulatory region 626802	1178 bp proximal
Tssr55050	transcription start site region 55050	561 bp upstream
Tssr55051	transcription start site region 55051	684 bp upstream
Tssr55052	transcription start site region 55052	878 bp upstream
Tssr55053	transcription start site region 55053	955 bp upstream
Tssr55054	transcription start site region 55054	1014 bp upstream
Tssr55055	transcription start site region 55055	1030 bp upstream
Tssr55056	transcription start site region 55056	1056 bp upstream
Tssr55057	transcription start site region 55057	1221 bp upstream
Tssr55058	transcription start site region 55058	1261 bp upstream
Tssr55059	transcription start site region 55059	1300 bp upstream