rs46475081 SNP Detail

Summary

• ID
  rs46475081
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134069244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATC CCAACACTGG AGAGGCAGAA
  T
  CAGGTAGATC TCTACTCTAA GTTCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147525901	ENSMUSSNP5627274	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321346944	CHEV_4_133897848	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46475081					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134069244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	989 bp proximal
Rr601645	regulatory region 601645	758 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	1248 bp upstream
Tssr39548	transcription start site region 39548	1210 bp upstream
Tssr39549	transcription start site region 39549	1265 bp upstream
Tssr39550	transcription start site region 39550	1560 bp upstream
Tssr39551	transcription start site region 39551	1590 bp upstream
Tssr39552	transcription start site region 39552	1665 bp upstream
Tssr39553	transcription start site region 39553	1699 bp upstream
Tssr39554	transcription start site region 39554	1750 bp upstream
Tssr39555	transcription start site region 39555	1949 bp upstream