rs46475087 SNP Detail

Summary

• ID
  rs46475087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148781211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGTGCTTAT TATTTACAGA AAGAGGAAAC ATCTGAACTC
  TGTTTGCTAA CTACAGTGTG ATGGGAGCGA GCCTGCAGGC GGTGTGCAGT CCCTGTCTGC
  Y
  TGCCAGCTCT GCTTAGTCCC AGCGTATTAA TGAACAAGTG CAAGTATTTG AAGAATCAGC
  ATTTCCGCAT TTGCATGCAA ACTCTCATGC TGGGTAATTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61098105	NES16608719	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46475087					SNP	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098105	NES16608719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148781211 () rs orientation: forward

Symbol	Name	Function Class
Rr587252	regulatory region 587252	within coordinates
Rr587253	regulatory region 587253	1486 bp proximal
Tssr36091	transcription start site region 36091	1514 bp downstream
Tssr36092	transcription start site region 36092	1539 bp downstream
Tssr36093	transcription start site region 36093	1576 bp downstream
Tssr36094	transcription start site region 36094	1604 bp downstream
Tssr36095	transcription start site region 36095	1661 bp downstream
Tssr36096	transcription start site region 36096	1766 bp downstream