rs46475979 SNP Detail

Summary

• ID
  rs46475979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54946428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAACAAAAG CACAAAGGGT TCGTTAAAAA GCCGTCTCCC
  TCCCTCCCCC CAGCCACCAA ATGCTCTGCA AGAAAAGCCA CAGCCCAGCC CGTGCTTGCT
  Y
  GCTCGCTCGC TCGGCACATC TGGTTTCAGT TACCTGTGCC CAAACTGCAG CTCTCAGAGA
  AACAGAGCTC GAGCTGACTC CATGGTTTAA GATCTGTCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60735305	NES16377546	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46475979					SNP	C	C	C	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735305	NES16377546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54946428 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	1311 bp distal
Rr411099	regulatory region 411099	within coordinates
Rr411100	regulatory region 411100	1682 bp proximal
Tssr11696	transcription start site region 11696	94 bp upstream