rs46476508 SNP Detail

Summary

• ID
  rs46476508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAAATA TGTTACAGAA
  GGTATGCTGG GGCCAGCCAG ATGGCTCAGT GGAGAAAGGG GCTGATAAAG GAAGGTGCTT
  GCTGCCAAGT CTGCCCACCT GAGTTCAATC CCTGGGTCTT ACACGGTGGA AGGAGAGAAT
  CAATTTCCAT AAGTGTCCAT AAGTATCCAT AAGTATACTA CTGCATGTGT GTACTCTCAC
  R
  CATATAAACA CATTCAATTA TCCATCAATC AATCAATGTG AAGGGATTCC TTTTCTGTTG
  TGGAAATGAA ACACCGTAAC CAGAGCAATT TGTAGAAGGC AACAATTTAT TGTGGCTTAA
  GATTCCAGAG GGATAAGAGT CCATCATTGT GAGGAGCCAG GCAGCAGGTG GCAGAAAACC
  AGGAAGCTGA GACACCACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss149092883	ENSMUSSNP1561776	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322575038	CHEV_8_35169800	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46476508					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1369 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1600 bp upstream
Rr661952	regulatory region 661952	157 bp proximal
Rr661953	regulatory region 661953	589 bp proximal
Rr661954	regulatory region 661954	1096 bp proximal
Rr661955	regulatory region 661955	1105 bp proximal
Rr661956	regulatory region 661956	1780 bp proximal
Tssr80889	transcription start site region 80889	1016 bp downstream
Tssr80890	transcription start site region 80890	1070 bp downstream
Tssr80891	transcription start site region 80891	1697 bp downstream
Tssr80892	transcription start site region 80892	1765 bp downstream