rs46477313 SNP Detail

Summary

• ID
  rs46477313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTT TGGAGAGATC TCCACCTTAA
  Y
  TCAACTGGAT GGGCCCATCT GTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138742409	ENSMUSSNP5508978	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324175500	CHEV_12_114668308	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46477313					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393717 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	431 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	264 bp upstream
Ighj2	immunoglobulin heavy joining 2	582 bp upstream
Ighj3	immunoglobulin heavy joining 3	965 bp upstream
Ighj4	immunoglobulin heavy joining 4	1530 bp upstream
Tssr115504	transcription start site region 115504	130 bp upstream
Tssr118005	transcription start site region 118005	1550 bp upstream
Tssr118006	transcription start site region 118006	1519 bp upstream
Tssr118007	transcription start site region 118007	1473 bp upstream
Tssr118008	transcription start site region 118008	1446 bp upstream
Tssr118009	transcription start site region 118009	1435 bp upstream
Tssr118010	transcription start site region 118010	1297 bp upstream
Tssr118011	transcription start site region 118011	1199 bp upstream
Tssr118012	transcription start site region 118012	964 bp upstream
Tssr118013	transcription start site region 118013	949 bp upstream
Tssr118014	transcription start site region 118014	845 bp upstream
Tssr118015	transcription start site region 118015	749 bp upstream
Tssr118016	transcription start site region 118016	595 bp upstream
Tssr118017	transcription start site region 118017	255 bp upstream
Tssr118018	transcription start site region 118018	279 bp downstream
Tssr118019	transcription start site region 118019	296 bp downstream
Tssr118020	transcription start site region 118020	352 bp downstream
Tssr118021	transcription start site region 118021	492 bp downstream
Tssr118022	transcription start site region 118022	524 bp downstream
Tssr118023	transcription start site region 118023	689 bp downstream