rs46477681 SNP Detail

Summary

• ID
  rs46477681
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94227530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTGAAC CCTGGGGGGT
  AACAGCAGTG AGTAGGTGTA ATAACACTCA GAGCTTATTG GGTTTTCTTC TTGCTTGTAA
  TTTTTAAACA CTTCTTCCTA AAGTGTCTCC TGTCCTGTTC CTCTTTTCAG TAAATTACTT
  TGTTAAGGCT TCTGGGCTGC TGTGTGGGTG GGAGCCTCTC TGCTGTTCTG TCAGTCAGTG
  K
  CGGGGTGTGC TGCCGAAATG CTTACTACCT GTGCTTTGTG TTTTGTATCA TGGAAGGATA
  AGAAAAGTCT TAGCTGTCTT TGTTTTATTT TAAGTTTGAA CACAAGGTCA TAAAAGAAAA
  GGTTCCTTCA AGACCTGTTC TGAAACAGAA ATGTTCCAGG TAAGACTTTG AACATCAAAC
  AGTAGTTTTA TGGTGTCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60515573	NES16527516	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46477681					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515573	NES16527516	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94227530 () rs orientation: forward

Symbol	Name	Function Class
Tssr139547	transcription start site region 139547	1564 bp downstream
Tssr139548	transcription start site region 139548	474 bp downstream
Ttc3	tetratricopeptide repeat domain 3	within coordinates