rs46477881 SNP Detail

Summary

• ID
  rs46477881
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137446488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT GAGGTCCCTC CCCAAGCCCC
  A
  CCCTGCAAAT TCAGGGCAGT GGCTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147617685	ENSMUSSNP4680928	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321366750	CHEV_4_137275092	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46477881					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137446488 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	783 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	313 bp proximal
Rr100343	regulatory region 100343	112 bp proximal
Tssr39776	transcription start site region 39776	1822 bp downstream
Tssr39777	transcription start site region 39777	1796 bp downstream
Tssr39778	transcription start site region 39778	37 bp upstream
Tssr39779	transcription start site region 39779	67 bp upstream
Tssr39780	transcription start site region 39780	343 bp upstream
Tssr39781	transcription start site region 39781	508 bp upstream