rs46479884 SNP Detail

Summary

• ID
  rs46479884
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55292313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAAGGGTG ACAGTGACCC TCTCAATGTG GTTGGGAAGG
  CTGTCCTGCC AGGAGTTAGA TAGTGAAGAT GAAGGGTGTT TCATTTGGGA GAATAGACTG
  G
  TTTTTTTTTT TTTTTTCCCT GCCAGGTCCT CCTTCTCATC ACTTCTTAGG CATGGAGAGA
  TGAAGGACAG ATGGAGTACC GCACAAGGAT ACAATGGAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss139576700	ENSMUSSNP549788	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs46479884					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55292313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6483	CpG island 6483	588 bp distal
Rr492408	regulatory region 492408	1956 bp distal
Rr492409	regulatory region 492409	1848 bp distal
Rr492410	regulatory region 492410	221 bp distal
Rr492411	regulatory region 492411	147 bp proximal
Rr492412	regulatory region 492412	530 bp proximal
Rr492413	regulatory region 492413	648 bp proximal
Tssr125745	transcription start site region 125745	931 bp downstream
Tssr125746	transcription start site region 125746	14 bp upstream
Tssr125747	transcription start site region 125747	804 bp upstream
Tssr125748	transcription start site region 125748	993 bp upstream