rs46479935 SNP Detail

Summary

• ID
  rs46479935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAACCTG CAATAACGAG
  TTATTTATTC TACATGATTG TATTCTAATT AGAGGAAGAG ATTGGACAGA TAGATCTGTA
  AAGAACTGAA GGTGAATTTA CAGCTTATTT TACCCAGGAC CGTCAGGAGG TCAGAGAAAG
  TTCTTCATGT CTTTGCTGAG TGAGAAACAA GTTAGAAACC TAAGCTCTGC AACACTGTTG
  Y
  GGAACAGTGG AAACCACAAA AACTAACCGA TGAAATCACT GCATGCTTGC TTTATAAGAA
  ACTGCAAATT TGGTCAAGCA GCAATGGTGG GCGTCTTCAG CCCCATGCTT TTTTTTTTTT
  AAGCACGTTT GGAATGAAGA ATGTTCTGGA GCTGGGTTTT ACCGGTGTGG CTCTCAGCGT
  CTCTTAGCTT TAAATTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132681603	ENSMUSSNP237001	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323821053	CHEV_11_96408222	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46479935					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437734 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	134 bp distal
Rr238061	regulatory region 238061	1467 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104544	transcription start site region 104544	1513 bp downstream
Tssr104545	transcription start site region 104545	1475 bp downstream
Tssr104546	transcription start site region 104546	1459 bp downstream
Tssr104547	transcription start site region 104547	1427 bp downstream
Tssr104548	transcription start site region 104548	1327 bp downstream
Tssr104549	transcription start site region 104549	1310 bp downstream
Tssr104550	transcription start site region 104550	1259 bp downstream
Tssr104551	transcription start site region 104551	1219 bp downstream
Tssr104552	transcription start site region 104552	1211 bp downstream
Tssr104553	transcription start site region 104553	119 bp upstream