rs46480088 SNP Detail

Summary

• ID
  rs46480088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43646942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCAAAT GCAAATACTC
  CAGACAAGCA CTGTAACGAG AGTGAGTGAA TTCAGCCAGG TATCAAGTAA TAACAAACCG
  GCGGGCACGA AATCAGAAAT CAGAGTGTTT ACAATACCCT ACAGGACAAA CAGAACACCT
  GTGCAGGGCA GGGCTGACCA ATGGGTCACC CGTGGGTGGC CCAAAGGCTC TGAATTCCCC
  R
  AGCTGGAAAT GCCAGTTAAT TACAGAAGGC CTGGATCTAT CTTCTGTTTG CCTGGGTCAC
  CCGGGAGCCC AAAGCTGGCG TTGCTTGTCT CTGCCTACCT TGGATAAAAC AAAGCATCAG
  ATTCGCCAGG CATGCTGCCC CATCCTGAAG AACCAGAATC GAGGATCCAG GGACACTCCC
  TGCCCCACCC AGGGAAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148942635	ENSMUSSNP878399	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46480088					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43646942 () rs orientation: forward

Symbol	Name	Function Class
Gm32878	predicted gene, 32878	within coordinates
Gm47683	predicted gene, 47683	within coordinates
Rr283572	regulatory region 283572	within coordinates
Tssr119503	transcription start site region 119503	525 bp upstream