rs46480653 SNP Detail

Summary

• ID
  rs46480653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30450874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGGGAG AGAGAGGAAA
  ACAGGAGGGG GCTGGGCAGG GCAGAACCCT ACTGGGGTGG AGGGCCTGAG CAGGTTAAAG
  AGCAGAGGCA AGGATCTTGT CCATGAATCA TCCTGTCTTC CTCCTCCTCC TCCTCCTCCT
  CTTAATTGCT CAATCCCAAA TATCTCTGGG AAACACCCCC TTGACTGAAC CGAAGTCAGA
  R
  CCTCACAGGA GGGATTGAGT CATGAGGGGT GGGGAAGAGG GAGGGAGGTG AAGGATAAAT
  AGCGGCCTCG CTCCCTGGCT CCTCTCTGCA TCCTCCCTGC CTTCCCAACA ACATGTATCT
  TGTCAGTTTG CTCAGCTCCT GCTGCCTCTT AGTGCTCCTG GGGACTCTGC CTGCCCGGGC
  AGCCCATGAG GATCCCGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60990280	NES16139136	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46480653					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990280	NES16139136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30450874 () rs orientation: forward

Symbol	Name	Function Class
Rr644909	regulatory region 644909	1270 bp distal
Sbsn	suprabasin	22 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65808	transcription start site region 65808	77 bp upstream
Tssr71856	transcription start site region 71856	708 bp downstream