rs46486260 SNP Detail

Summary

• ID
  rs46486260
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47011211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGGGGAT GCTGTTAATT
  TCACTGTTTA CAGAAAGAAG TCCGGGGTGA GTGGAGGCTT TTTTGGTGTT TTAAAGCCAG
  ATGGTATTTC CTGCCTTGAT CAGCCTCGGA GCTTTGGTTC CCATGGCAAC TCTGAAGTTC
  CACCTACTGC AACTTCCTCA TTCTCTGAGC TTCTTCCTCT TCCACCATAG TGGGGGGGGG
  K
  GGGGGGGGCA GGAGAATAAA GCCATTAACT AGTTTGTGTG TTGCACTTCT CAGCTGACAC
  TGCGCTCCAG CTCCAGCGTG TATGACCTCA GTCCTCGCTG CAACCTAGAC ACAGAGCATC
  TGCTGTCTCT GTCTTGCACA GGGAAACCCA GGCTCCAGAG ACAGGTGATA TGTTTTGCTT
  GCCCTCATTG GTGTCAACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
ss361405446	MGP_WTSI_4_47024083	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	T	T	T	T	T	T	T	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
rs46486260					SNP	G	T	T	T	T	T	T	T	T	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361405446	MGP_WTSI_4_47024083	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47011211 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	10 bp upstream
Gm68750	predicted gene, 68750	within coordinates
Rr367622	regulatory region 367622	474 bp downstream
Rr376427	regulatory region 376427	1449 bp upstream
Tssr37147	transcription start site region 37147	27 bp upstream
Tssr41615	transcription start site region 41615	404 bp upstream
Tssr41616	transcription start site region 41616	72 bp upstream