rs46489170 SNP Detail

Summary

• ID
  rs46489170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46341633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCAAAT AAGGTTGTGA
  CTTATGCTTG ACCCACACTG TTCTCTGGCT CCCTCTGTGT TTATCTCTAA TTATGTCTCT
  GACATATTTA CATATTCTCT TACTCCATAA AATTGTGAGC TTCATGAAGA TGGGAAGTCG
  GAGGACAAGC ATCAGCCTAA TTAACATGTG GTGTCACTTT GGAGTCGGAG ACAAAATCAA
  Y
  CAGAAGTACA AAGGCAGGCA GATGCCCCTT CCTTCCTCCC TCCACACACT GCCGTCTCTC
  TGGGAGAAAT TACAGTTTTG TTTTTTAGAA GGAGGCAGTC AGGTGTGTGA TATATTTAGA
  AAGATTTCTA TTAAAATGGT TGGGATCTTG AAAAAAAATA TTTGGAGATG TTCAGAGGAT
  ACACTTTAAT TATCTGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61787372	NES17721021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46489170					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61787372	NES17721021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46341633 () rs orientation: forward

Symbol	Name	Function Class
Gm10113	predicted gene 10113	within coordinates