rs46490472 SNP Detail

Summary

• ID
  rs46490472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12217614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTTTT
  TTTTTTTTGA GACAGGGTTT CTCTGTGTAG CCCGGGCTGC CCTGGAACTC ACTCTCTAGA
  CCAGGCTGGC CTTGAACTCA ACAGTTCTGC CTGCCTCTGC CTCCCAAGTG TAGGGGTCAA
  AGGTGTGCGC CACCACAGGA TCCTTTTGAG ACTCAGCTAT GTAAAATAAA ACAACAACAA
  Y
  GAGATTCGGA TACATACCAG GGACAGGGAA GGTCATGGAT TGGAATGGGA GACATTGTTT
  AGTTTTTTGG GTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTAG ACAGGGTTTC
  TCTGTGTAGC TCTGGCTGTC CTAGAACTCA CTTTGTAGAC CAGGCTGGCC TCAAACTCAG
  AAATCCTCCT GCTTCTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52532031	NES15597953	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46490472					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52532031	NES15597953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12217614 () rs orientation: forward

Symbol	Name	Function Class
D15Mit1005	DNA segment, Chr 15, Massachusetts Institute of Technology 1005	790 bp proximal
D15Mit1006	DNA segment, Chr 15, Massachusetts Institute of Technology 1006	654 bp proximal
Mtmr12	myotubularin related protein 12	within coordinates