rs46490491 SNP Detail

Summary

• ID
  rs46490491
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134681920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGGATG GTACATCATT
  GGACCACATC CTGGGCTGCC TCCCTGGCTG GGGGAGGAGA GCGGCCCACC AGTCATTCTG
  CAGATGGTTA CCTTGCCAGA AGGATTGGTA ACATGAACAA AGGTATCACT GAAGGATGCA
  AGAAGGTGGC AGATGCCGAA TACATTCTCT CCTTCAGCTA CTTGAGGGCT GAGGCCCATT
  R
  ATGACTTTGT CTATACCTTC CCTGTGCAAG GTGACATTCT GTGCATTGCT TTCAGACTCC
  TACACTAGAT ATCCAGATAT TCCATTCTTT TTTTTTTTTT TTTTTTTTTC CCAGACAGGG
  TTTCTCTGTG TAGCCCCGGC TGTCCTGGAA CTCACTCTGC AGACCAGGCT GTCCTGAAAC
  TCACTCTGCA GACCAGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60845245	NES16004338	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46490491					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60845245	NES16004338	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134681920 () rs orientation: forward

Symbol	Name	Function Class
Rr622113	regulatory region 622113	1835 bp distal
Rr622114	regulatory region 622114	1924 bp distal
Rr622115	regulatory region 622115	1737 bp distal
Rr622116	regulatory region 622116	544 bp distal
Rr622117	regulatory region 622117	1328 bp proximal
Rr622118	regulatory region 622118	1793 bp proximal