rs46490554 SNP Detail

Summary

• ID
  rs46490554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37930050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATACCAAG GCCAGTCCTG AGCAGGCTAG CCAGATAAAC
  AGGATGTCCA CAGTGTGTGA GAACACATGA GTGGAGCGAC CCTCTCTGCC CATCTGTCAG
  Y
  CCCATAAGGG ACTGTCGTGC CTTGCTCCAT CTGCCTGTCT AGGGCAGGAA AACAGGCAGC
  ATGGAACATA TGTGAGAAAA GCCCTCTCCC TGGCTACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss134816635	ENSMUSSNP5484393	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320713695	CHEV_3_37774823	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46490554					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37930050 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	within coordinates
Rr575580	regulatory region 575580	21 bp proximal
Rr575581	regulatory region 575581	429 bp proximal