rs46493280 SNP Detail

Summary

• ID
  rs46493280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:96600565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGAGGAG GCTGATGGAT
  AGAGTGAAGA AAAATGATAC AGCAGAGCAT GCAGGGGTCA GGGGTTATCA TCTGAGAATG
  ATGGGAAGCT CCTCTAAGGA AGGGTCACGT GGACAGAGAT GGGACTAAAG AACAGCATTT
  CCTGAATCAA GGAAGAAGGG ATCTCTTTGT GAAGGCAAGG CTTGGTTTTA TTTACATTTT
  Y
  CCAGTAAGAC TCAGGATTTC CGGTCTCTTG AAGATGATTA TTTATGGAAG AAAAGAAGGT
  TGTGAGTGCT GAACAATCAC TGGAAAGTCT TGTCTGGCTT AGGGAAGGGG GAAGGACAAT
  GTTTGCCGGG AATTTAATCA GAGGAGACAA CACTGAAATT TCCTCTTCAC TCCAGGCATT
  TAATGTCCCA GTGCCTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52166798	NES15315973	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46493280					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52166798	NES15315973	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:96600565 () rs orientation: forward

Symbol	Name	Function Class
Rr221173	regulatory region 221173	within coordinates
Tssr95440	transcription start site region 95440	288 bp upstream