rs46493472 SNP Detail

Summary

• ID
  rs46493472
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:31469206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGTTAT TTAATCAGCT
  ATGGTTGTTG CTTGTCCTGT GTTATTACTA TGGCCTGAGA TAACTTATGT TGCAATAACA
  CATTTTTGGC CTAAAGAAAA TATTTCAAAG ACTTGTGCTG AAGCTTAGGC ATTTGTGGCT
  TTCCGGAGCT GTCACCGGAT CCAGACTGTT TTCTATTCCT ACTACCACTG AGACAAACCA
  M
  GGTAGTGGCA CACTGCCTCC ATCCCTCTCC CTCAGCTAGC CGGTGACCAC CCCACCCCCA
  TCTCATGCAG ACATTTTAGA CTCTGTACAT CAAACCCTAC AAGTACTAGT CCCTGCTTAG
  AACCATAAAT CCTTGCCACG GCACCGAATA CTCCTTTATT TAAGCTTTTG AATCCGTTAC
  TTATTCAGGG AGAGAGGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147445958	ENSMUSSNP6512320	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46493472					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31469206 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	Intron
Tssr133930	transcription start site region 133930	1139 bp upstream
Tssr133931	transcription start site region 133931	1108 bp upstream
Tssr133932	transcription start site region 133932	1080 bp upstream