rs46495044 SNP Detail

Summary

• ID
  rs46495044
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115219627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTATTT CTTTTCTTCA
  GGCAGTTGGC AGTTCTAGAA GGAAAGGTGA CCATTTACTG AGTGCCGCCT ATTATATTCA
  AGTCGGTGTT CACATGCTTT GGAGTTTGAC TTAACAGAAT TAAAGACATG ACTGTACGTT
  CAACCTGTGT GTGAGTGCGT GATTCTGTTC AAGAGAGAGT TTCTATTTGC TCTTTGATAA
  M
  CATTGCTTAA TTAGATTGAC TCAGTTACCA TGTGTGACTA TTAGAAATGT TTCCCACGTC
  AATTCCAGTA GTGAAAATTG CCTAATCTTA ACTCGAACTC AGCAGGCTTC TAAAGTGATT
  TGTTGGTTTG AACCCTTATG GCGTCATTCT TCTTAAGGCA TGGTCTAAGA TATAAAAAAT
  AAAAGAGTAG AAAATAAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss52214192	NES15331635	PERLEGEN	MM_PANEL2	f	SNP	A	A		C
ss323484715	CHEV_10_114820778	CHEVERUD	SCREENING_POP	f	SNP			A		C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs46495044					SNP	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52214192	NES15331635	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115219627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	313 bp proximal
Rr402239	regulatory region 402239	1006 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	571 bp proximal
Rr439215	regulatory region 439215	678 bp proximal
Rr439216	regulatory region 439216	1237 bp proximal
Rr439217	regulatory region 439217	1500 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	195 bp upstream
Tssr95814	transcription start site region 95814	1199 bp upstream
Tssr95815	transcription start site region 95815	1229 bp upstream
Tssr95816	transcription start site region 95816	1323 bp upstream
Tssr99330	transcription start site region 99330	604 bp downstream
Tssr99331	transcription start site region 99331	615 bp downstream
Tssr99332	transcription start site region 99332	666 bp downstream
Tssr99333	transcription start site region 99333	754 bp downstream
Tssr99334	transcription start site region 99334	794 bp downstream
Tssr99335	transcription start site region 99335	1029 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	1237 bp upstream