rs46495388 SNP Detail

Summary

• ID
  rs46495388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81031738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCTCTG GGTGTGGTTA
  TTAGGACTTG GGGTGTGTGG GTTTTGGTGA GGTCACAGTC CTAGGGTTAA GTGTGGGGCA
  GGAGAGTCAA CAAGAAAAGC TGAGAATCTG GTTCGGTGGA TAAAGTGTTT GTCTCGAGTG
  CGTGGGGACC TTGGTCAGAA TCCCTAGGAC TCAACTCAAC TGAGGCACAG CAGTGTCTGT
  R
  TGGAGTCTGG AAATCCAGCC AGGCAGGGGA CCTTATGCTC TGCTAGGTCC CACAGGCCAA
  GTTCTTCAGG ATCTGGGGAC AATAGAGCTG AGGGGTCAGC CACGAGGCCC CACTGCTGGC
  TCTGGGGCTT GTGAGTGTCC CTATCAGCAC GGTAACCCAT ACGGGAGACA GAGGAACCTT
  GAGCTCATTT TGTGGGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388379	NES15266913	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46495388					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388379	NES15266913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81031738 () rs orientation: forward

Symbol	Name	Function Class
Atcayos	ataxia, cerebellar, Cayman type, opposite strand	within coordinates
Cpgi1954	CpG island 1954	1198 bp distal
Rr435553	regulatory region 435553	1201 bp distal
Tssr94716	transcription start site region 94716	1297 bp downstream
Tssr94717	transcription start site region 94717	1204 bp downstream
Tssr94718	transcription start site region 94718	821 bp downstream