rs46495462 SNP Detail

Summary

• ID
  rs46495462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66057853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTTCTG GAGCAGCAGG
  CCCTGGTGAA GGCATAGGAG CTCTTGGATG AGTATCGGAG TAGGGAGTAA GACTAGTTTC
  TCCAACGGTA AGTTCAAAGC TATAGAGTGT TGGGAGTCTC AGGAGGAAGA CACCAACCCT
  GCTGGGGACC CCATTTCTCT TGTCCTAGGT GATCCCTGGG TAGCAGGTAG GTTCTAGTAA
  Y
  TGGTTCTGAG CGCTTGCTGC AGATGCATTC TCAAGATGAC CACTAGAGGG CAGCCTCCGA
  CAGGTTACTG AACTGCAGCC CCGTGGACAG AATCTTCTTA TGGTCCAGGG GAGGGGGTGG
  GGGTGGCGAC GGAGAAGCTC TCTTTGCTGC CCCGCTCATC TCTGATAGGA ATCCGAGAGT
  GTGTACTGGC ACCAAAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss63158181	NES17453814	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs46495462					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63158181	NES17453814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66057853 () rs orientation: forward

Symbol	Name	Function Class
Gm50119	predicted gene, 50119	186 bp upstream
Rr346800	regulatory region 346800	53 bp distal
Rr353053	regulatory region 353053	within coordinates
Rr393825	regulatory region 393825	within coordinates