rs46495662 SNP Detail

Summary

• ID
  rs46495662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117011483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCGTCT CCTCAGATAA
  CTTCATCCTC ACTTAAGAGA TCAGCAGCAG AACTGGACAA AGTTCTCATC ACCGAGACAG
  TGCCGCATCA TCCCCTGCCC CCAGCTACAC AACCTGCTTT CCACCCACAC AGCACGTTAT
  TAGCCACCTA CACTCACATG TACCCCACTG AACCAGGAAG GGTCCACCCA CCCCAGCCCC
  R
  CAGCCACCTC ACCTAGAAGC TTGCCCTGCT GGAACTGCTC CTCCAGGAGG CTGCTGATTT
  TGGCATTCTT TTTCCTTTCA TCGTATTTCT TTTGAATTTT CTTTGATCGT TTTTTGTTTA
  AAATCTCTTC CTCCTCAGGA GTCTGAATGA AAAGAATATG AATTGATTTG TCACCAGGAA
  AGTCACAAGC CTCCTTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147285196	ENSMUSSNP6776820	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46495662					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117011483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	1071 bp proximal
Gm22980	predicted gene, 22980	124 bp upstream
Gm26330	predicted gene, 26330	900 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	within coordinates
Rr398411	regulatory region 398411	1633 bp upstream
Rr598068	regulatory region 598068	957 bp distal
Rr598069	regulatory region 598069	1947 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	230 bp downstream
Snord55	small nucleolar RNA, C/D box 55	1485 bp downstream
Tssr38607	transcription start site region 38607	448 bp downstream
Tssr42956	transcription start site region 42956	1558 bp downstream
Tssr42957	transcription start site region 42957	1789 bp downstream
Tssr42958	transcription start site region 42958	1836 bp downstream
Tssr42959	transcription start site region 42959	1858 bp downstream
Tssr42960	transcription start site region 42960	1899 bp downstream
Tssr42961	transcription start site region 42961	1913 bp downstream