rs46496974 SNP Detail

Summary

• ID
  rs46496974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGCTCCA AAAAGTACCT CTTGACCTCA TACATAATGA
  GGATTATTTT TCTATTATGG GGATAGAGGA GTGGGTACAA ACCCCAGGTG CCCAAGTCAC
  Y
  AAACACATCC ACATGCACCA TTAAACAGCA TGTCACATCC CCCAGCTGAG TGACTGAGAA
  ATGTCAAAGT CACCCAAGAA TAAAGTGTAA GGGAATGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132135309	ENSMUSSNP4787967	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46496974					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869554 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2880	CpG island 2880			693 bp proximal
Gm30927	predicted gene, 30927			1303 bp upstream
Rr447212	regulatory region 447212			846 bp distal
Rr447213	regulatory region 447213			519 bp proximal
Rr447214	regulatory region 447214			1192 bp proximal
Rr447215	regulatory region 447215			1594 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21			Intron
				Noncoding-Transcript-Variant
Tssr101464	transcription start site region 101464			1297 bp upstream
Tssr101465	transcription start site region 101465			1316 bp upstream
Tssr107965	transcription start site region 107965			1159 bp downstream
Tssr107966	transcription start site region 107966			1221 bp downstream
Tssr107967	transcription start site region 107967			1543 bp downstream
Tssr107968	transcription start site region 107968			1568 bp downstream
Tssr107969	transcription start site region 107969			1626 bp downstream