rs46498648 SNP Detail

Summary

• ID
  rs46498648
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51445079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAGGCA CTTAATACTG
  GCTTTCCAAT AGCTAAGTAC AAAAACTTAT CAAGATGTTC ATAAATTAGG TCATACTATC
  CAGGACCTAT GACTGCACAA CGAAATGAAA AAGCAAAATT ATAAAACAAA TCCGTTATTT
  TACTGTATAG CCTAAATTTG TAAGTTTCTC CAAAATGTGC TCAAAAAGCC AATGTTTACA
  M
  TTTTTAGGTT TTGAAATGTT TAATAAAAAC GACCAAAATT GTTTTAAATA GTCAAAATAG
  TTACAAAAGC CTTAATCAGG ACTCCAAATA GTGTTTCTGG TAGCTCTACT AAAATGTCAG
  TAAATTGGCT TTCCTTAAAC TAAGTTGCAA GTATTAAATA CACCTTGTTT TTTCATATCA
  CTAACGAAAG CAAAAGCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133189245	ENSMUSSNP2269533	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46498648					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51445079 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17402	CpG island 17402	746 bp proximal
Gm67572	predicted gene, 67572	1331 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	216 bp upstream
Rr630212	regulatory region 630212	102 bp distal
Rr630213	regulatory region 630213	841 bp proximal
Rr630214	regulatory region 630214	1663 bp proximal
Tssr56443	transcription start site region 56443	1329 bp upstream
Tssr60939	transcription start site region 60939	1874 bp upstream
Tssr60940	transcription start site region 60940	1695 bp upstream
Tssr60941	transcription start site region 60941	1411 bp upstream
Tssr60942	transcription start site region 60942	1264 bp upstream
Tssr60943	transcription start site region 60943	1154 bp upstream
Tssr60944	transcription start site region 60944	1107 bp upstream
Tssr60945	transcription start site region 60945	278 bp upstream
Tssr60946	transcription start site region 60946	352 bp downstream
Tssr60947	transcription start site region 60947	1737 bp downstream
Tssr60948	transcription start site region 60948	1770 bp downstream