rs46499557 SNP Detail

Summary

• ID
  rs46499557
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148793549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGTTGAGC TGTGGAGAAA GCTCAGTGGA TAAGGTGCTG
  GCGCAGGAGA GGAACCACAT TAGAAATCGG GGAAGGGGGT GAGGGCACAC AATCCCGGGT
  T
  CAGGAAGGTG GAGACAACTA GAACCAGAGG CTCAGCTTAC TTTTCCAGTT CCAGGCTGGA
  CCCTGTCCCA ATAAACAAAG TGGAGGGGCA CCTAGGGAG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136066825	ENSMUSSNP141383	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46499557					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148793549 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587258	regulatory region 587258	907 bp distal
Rr587259	regulatory region 587259	249 bp distal
Rr587260	regulatory region 587260	within coordinates
Rr587261	regulatory region 587261	510 bp proximal
Rr587262	regulatory region 587262	809 bp proximal
Rr587263	regulatory region 587263	1898 bp proximal