rs46500050 SNP Detail

Summary

• ID
  rs46500050
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66057706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAGAGGTC AAGTCCTTCC CTCCTTGAAT AATTTAACAT
  AGAACCATTT CCTTCTGGAG CAGCAGGCCC TGGTGAAGGC ATAGGAGCTC TTGGATGAGT
  W
  TCGGAGTAGG GAGTAAGACT AGTTTCTCCA ACGGTAAGTT CAAAGCTATA GAGTGTTGGG
  AGTCTCAGGA GGAAGACACC AACCCTGCTG GGGACCCCAT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss63158190	NES17453811	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs46500050					SNP	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63158190	NES17453811	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66057706 () rs orientation: forward

Symbol	Name	Function Class
Gm50119	predicted gene, 50119	39 bp upstream
Rr393825	regulatory region 393825	within coordinates