rs46500708 SNP Detail

Summary

• ID
  rs46500708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27860532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGACGAT TGTCCTGGTC
  ATGTACAGAA CTGTTTTATC GTCATGATCT CCTAGTCAGT GCCACACTGT CTAAGTATGT
  CTGTAGCATG TGCATTACAT TAGGCGTGCT GTAAGGTGTA CAGTAGGATG TGGTGGTTTG
  CATGCAGAAG TGATACCACT GTACAGAATG GATTTAGCAT CCTCCAGTCC GGTACCCTCC
  R
  GGGCTTCTGG ATCAAGGGGT GACTGTTTTG TGATGGTTTG GGTTTTTTTT TTTTTCTTCC
  AAAGTTTTCA ACGTTTTATG GTTTTCTTTC AAACTTTTAT TCTTTTAAGT AATCTAACGT
  TAGGACACTT GTAAGCAAGT GTGTGGAGGA GTACCCTTTC CTGGGGCTCT TCCACGGAAG
  CCACGCCCAT TTTACCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148632261	ENSMUSSNP5518023	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46500708					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27860532 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr380562	regulatory region 380562	201 bp upstream
Tssr65436	transcription start site region 65436	1676 bp downstream
Tssr65437	transcription start site region 65437	1613 bp downstream
Tssr65438	transcription start site region 65438	55 bp upstream
Tssr65439	transcription start site region 65439	1616 bp upstream
Tssr65440	transcription start site region 65440	1672 bp upstream
Tssr65441	transcription start site region 65441	1757 bp upstream