rs46502631 SNP Detail

Summary

• ID
  rs46502631
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61500978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCAGAGT ACCAAGAATT
  ATCTCATAAA AGACAGTAAA AGTCACAGCA TGGAAAATTG GGATGTCCTT CAACCAATAG
  GTTGTCCAGG AATAACAATT AATTGAGAAA CAGAAAATCA GTGGCACAAG TATGATATTG
  GGTCTCATGG AAATAAGTGA TAAAATCTAA ACTCCTTGGC TATACATTAT ATGTTAGTTG
  W
  TACAGCCAAA GACAGGGATC AGCCAGATCA TGTAAATGTA ACTTCTGGAG TATGATTCCC
  AGTTCCACTT AATGCTAGGA TAAGGCTTCT AAAGCTAGAG CTTCAGATTA GGGCCCCCTT
  GGACTTCTTC AACCGAAAAA AAAATCCTGC CCAGCACCCA TGTAAGTGAA TTCACAATCC
  TCTCTAATTG GATCTCTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61823451	NES17746813	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46502631					SNP	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823451	NES17746813	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61500978 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	within coordinates