rs46505225 SNP Detail

Summary

• ID
  rs46505225
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114482818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTAAAA CTTTACCATG
  CATTTGTTAT ACTGACTCTA GATATGTATA TGCATGTATG TATGCCTTTA TGTATGTATA
  TGCATATTTA CTCCAAATAC AGATTCCAAA CATATTTCAC ATTTAAAAAA AATTACATTT
  GTTAATGAAA ATTCCAATCA CACCAAGTAG GCATAAAGTA CTACAAAGAC ATCAAATTTA
  K
  TAAGGTCAGA AGCAGAACCA AGATCTATAA AATTGTAATT TTCAGGACTG GAGTGGGAGC
  TCAGTTGGTA AAGTGCAAGG GAGAGAGCCC AGTTCCTCGG CAGCCATGCT AAAGGCCAGG
  CATGACTTAC ACTGGGAATT TCAGCAGCGA CACGTGGAGA ATGCGGGATT CCTGGGACTC
  CACAACCAGT TAGCATAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62042819	NES17146369	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46505225					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62042819	NES17146369	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114482818 () rs orientation: forward

Symbol	Name	Function Class
Ndufs4	NADH:ubiquinone oxidoreductase core subunit S4	within coordinates
Rr275010	regulatory region 275010	618 bp distal
Rr278350	regulatory region 278350	1545 bp proximal
Rr282460	regulatory region 282460	1019 bp distal