rs46506259 SNP Detail

Summary

• ID
  rs46506259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39302610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGCCAT TCTGAAATCC
  AAGGTTTGTG TGAAATAATA GTTACATTAG CTTCTGTATC CACCACATCT TCTATTTAAG
  TATCATAGCA AATTTAATTT TGGAGTCTGA TGATTAACAT CTGTTTTCAA GGACATATAT
  TTTCCTGAAT TTCAAAATTC TTCTGATCTT TCAACTGGAA CGGCTTTATC TCTGATATAG
  R
  GAAACAGAAA CAGTTGAGCA ATTCCATCAC CAGTGTTAAA TTGCATATCT TAAAAAAAAA
  AAAAAACTTA GGCCATTTTT CAATTTCTCC CTTGAAATCT CCATCTATAA TTTGTGGATG
  CACAGTACAT CCTTGGGAAG TCAAATTATA TTTTCCAAAG ACCATCCCTA CTGTTTGTGA
  GCAAAGGACC ATAAACTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ
ss60312165	NES15803718	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ
rs46506259					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312165	NES15803718	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39302610 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1314 bp upstream
Tssr156338	transcription start site region 156338	1348 bp upstream
Tssr156339	transcription start site region 156339	1373 bp upstream
Tssr156340	transcription start site region 156340	1473 bp upstream
Tssr156341	transcription start site region 156341	1522 bp upstream