rs46508261 SNP Detail

Summary

• ID
  rs46508261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69574473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGTTACTT TCCTAAGTGA GCGGTCTCAC TGGCTTTGTT
  GAATTTTGAA GGCAGTCTCA CTCTGTAGCC TAGGCTGACC TTGAACTTTA GGCTAACCTA
  Y
  CACATGGGCT TCATATGTGG GATTATAGGC ACGAACCTAG TTGTTCATAG GCGGGTGCCT
  TTTCTCCCTG CAAGGACTTT GGCATCTTGT TCTTGAGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132360140	ENSMUSSNP4132795	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323731050	CHEV_11_69497149	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46508261					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69574473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1354 bp distal
Rr450067	regulatory region 450067	1812 bp distal
Rr450068	regulatory region 450068	1589 bp distal
Rr450069	regulatory region 450069	1073 bp distal
Rr450070	regulatory region 450070	684 bp distal
Rr450071	regulatory region 450071	186 bp proximal
Rr450072	regulatory region 450072	1602 bp proximal
Rr450073	regulatory region 450073	1897 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	1563 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	676 bp upstream
Tssr102520	transcription start site region 102520	708 bp upstream
Tssr102521	transcription start site region 102521	749 bp upstream
Tssr102522	transcription start site region 102522	842 bp upstream
Tssr102523	transcription start site region 102523	904 bp upstream
Tssr108774	transcription start site region 108774	1843 bp upstream
Tssr108775	transcription start site region 108775	1791 bp upstream
Tssr108776	transcription start site region 108776	1751 bp upstream
Tssr108777	transcription start site region 108777	1694 bp upstream
Tssr108778	transcription start site region 108778	1666 bp upstream
Tssr108779	transcription start site region 108779	1642 bp upstream
Tssr108780	transcription start site region 108780	1568 bp upstream
Tssr108781	transcription start site region 108781	1628 bp downstream
Tssr108782	transcription start site region 108782	1690 bp downstream
Tssr108783	transcription start site region 108783	1873 bp downstream
Tssr108784	transcription start site region 108784	1890 bp downstream