rs46509138 SNP Detail

Summary

• ID
  rs46509138
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70118790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAATGC ATTTGGAATG
  TTTTCTGGGA AGTCAATTTA GTTCATTTAT TGATTATCAG ATTCTAGAAG TCCCCTGGCC
  AGAACAACAC AATTCAGCTA AACTGGAGAG GGTTAGACTT GATGGCCGTG GGAAGGTTAA
  GGAAAAGCTA GTTCAGGATA CTACTACCTT GGGGTGCGGT GCGGTGGGCC AGCCCAGGGC
  W
  TCCTCTCTTG GAAGAGAAGC CCATCAGGCA CTGGATAGAC AGAGAGGAGG CAATGGGAAG
  GTGAAAGTCG TCCCACCCCC ATCTCTGCTG AGGACTCCGC AGGTGGAAAC TTCAGTGGAG
  AGTAAACAAG AAATACACGT CCGGTCCAAA GAGGAACGGC CATGGTTATT ACACTGACCA
  TATTACCAGG TTCTCTTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136604726	ENSMUSSNP6525674	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46509138					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70118790 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	within coordinates
Myo1e	myosin IE	within coordinates
Rr206677	regulatory region 206677	1989 bp distal
Rr206678	regulatory region 206678	1589 bp distal
Tssr85881	transcription start site region 85881	1703 bp upstream
Tssr90403	transcription start site region 90403	213 bp downstream