rs46509299 SNP Detail

Summary

• ID
  rs46509299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76563087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGACACA GGAATAGACA
  CACTGGCAGC CATGATTCCC ATGCTGGGCT TTCTAGGATG TGCTCTTCTG AGCCAAAGAG
  CAGGGGCCTG TCATGTAGCA GATGCATGGT ATCACACAGC GACAGTCATA GAGGTCTCCC
  GGTTGGGTTC AGAGCCATGC CCTGTCAGCA GGCCTGGCGG ATCTTGAGGT GATGAATAAA
  R
  GGTGGTCAGG AAAATACACA GCACCAGCAC TCCAGTCTGC TAACCCCAGC AGGCTACATA
  GCATTGGCTG ACTCTGGACC TGTGACCCTG ATTTACTTAA CCTATATTCC CCAGGATGGG
  TAGATGATAC TGCAGATGCA GCCTCAGGAT GGGGGAGGGG GGTGTAGCCC AGGTAGAGCA
  GTCAGCTGTG GCTTACGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61288883	NES16903831	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46509299					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288883	NES16903831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76563087 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	1218 bp upstream
Gm48276	predicted gene, 48276	within coordinates
Rr434319	regulatory region 434319	837 bp distal
Rr434320	regulatory region 434320	within coordinates
Rr434321	regulatory region 434321	872 bp proximal
Tssr3254	transcription start site region 3254	1301 bp upstream
Tssr3255	transcription start site region 3255	1008 bp upstream
Tssr3256	transcription start site region 3256	967 bp upstream
Tssr98207	transcription start site region 98207	1203 bp upstream