rs46509867 SNP Detail

Summary

• ID
  rs46509867
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:15641259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAGAGC AGCCTGTGCT
  CTTGCTCACC GAGCCCTGTA ATAGCATATT TGTAAAAGGT GTATATGGTG TGGGTTGGGA
  AATTCAGAGC ACAATTTTCA AGAGTTCGCT CTCTCTCCTT CTACTCTACG GTGCAAGGTC
  TTTTGTTTCT GCTGCTCCGA GATACTGCGG GATAACTGGC TAGAGAGCTT CTAGGTGATT
  S
  TCCTTTCTCT ACCTCCCACC TTACCCAGGG GTGATGGGTT ATGATGTGAT CCGCCATCCC
  CAGCCCTTCC TTTCTGGTGA CCAACCTCAG GTCATCAGGC TTGCCCACCT GCCAGCCCAA
  ACGTCACATG TTATAAACTA GAATAGCTGA AGGCCATGCA AGTAATTGTA AAGTTACTGT
  CATCTGAAAA TCGGAGATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136207117	ENSMUSSNP6695249	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46509867					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15641259 () rs orientation: forward

Symbol	Name	Function Class
Rr674373	regulatory region 674373	1917 bp proximal
Slc36a4	solute carrier family 36 (proton/amino acid symporter), member 4	Intron
Tssr83873	transcription start site region 83873	603 bp downstream
Tssr83874	transcription start site region 83874	877 bp upstream
Tssr83875	transcription start site region 83875	894 bp upstream
Tssr83876	transcription start site region 83876	958 bp upstream