rs46509987 SNP Detail

Summary

• ID
  rs46509987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153561487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAATGT TAACTTAATT
  CCTCAAAAAT ATGTATTCCA TTTGAATTAT GACTTCTTGT ATATATGTGG CTATTAATGT
  TGGAATAGTG AACCAACAGA AATAATAAAC TTTTTTCCTT CGAGACAGGA ACTCTCTGTG
  TAGCCTTGGC TGAACCAGGC TTAATAAAGT CAATCTATAT TACCAATAAA TTCTGTAAAA
  Y
  ATCCACATAT TTAAAAACTA TATGAAGGTT AAAAAGATGG CTCAGTTGTT AAGTTGTTAC
  TTTTTGCTAT TCCACAGGAC CTGAGTTAGA TTCTAGGACC CACACTGGGA GCTTGCAGCC
  ATTTGATAAA TCCATTTTGA GGGGGTCCAG TGCCCTGGCC TGGCCTCTGC TGGTACCAAG
  TGAATGTGGC ACATACTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss136114440	ENSMUSSNP5657103	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46509987					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153561487 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	1296 bp downstream