rs46510055 SNP Detail

Summary

• ID
  rs46510055
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:44884443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTACCCAGCT GCCCGGCTGC AGGTAGACGT GAGGGCAGTG
  GCGAAGGTTT GCATGCGGCG ACTGTTGGGT GAGCGGACTG CGGGTGGGGG GGGGGGGGGG
  A
  AAGGGGCTGA GGTGGAGCGA CCGAGCGTGC CATGCATTGA GCTAGGGAGC CTCTCTCAAT
  TCCACGACTG GGCTCGGCGT GGGAGAGGCG CCTGACGGGC G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148954742	ENSMUSSNP6743054	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs46510055					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44884443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5525	CpG island 5525			within coordinates
Gm60383	predicted gene, 60383			866 bp upstream
Jarid2	jumonji and AT-rich interaction domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr369688	regulatory region 369688			251 bp downstream
Rr403743	regulatory region 403743			121 bp upstream
Rr403744	regulatory region 403744			1833 bp upstream
Rr478586	regulatory region 478586			877 bp distal
Rr478587	regulatory region 478587			within coordinates
Rr478588	regulatory region 478588			232 bp proximal
Tssr119535	transcription start site region 119535			1417 bp downstream
Tssr119536	transcription start site region 119536			1353 bp downstream
Tssr119537	transcription start site region 119537			1270 bp downstream
Tssr119538	transcription start site region 119538			1160 bp downstream
Tssr119539	transcription start site region 119539			369 bp downstream
Tssr119540	transcription start site region 119540			151 bp downstream
Tssr119541	transcription start site region 119541			60 bp downstream
Tssr119542	transcription start site region 119542			52 bp upstream
Tssr119543	transcription start site region 119543			298 bp upstream
Tssr119544	transcription start site region 119544			314 bp upstream
Tssr119545	transcription start site region 119545			358 bp upstream
Tssr119546	transcription start site region 119546			386 bp upstream
Tssr119547	transcription start site region 119547			601 bp upstream
Tssr119548	transcription start site region 119548			757 bp upstream
Tssr119549	transcription start site region 119549			875 bp upstream