rs46510960 SNP Detail

Summary

• ID
  rs46510960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96139520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGTGTC AGCTCTCCTG
  GAGATGGAGT TACATGCAGT TGTGAGCTGC CCAATATGAA TGCTGGAAAC TGAACTTGGG
  AACCAAACTT GGTCCTTAGA AAGTGCAGCA AATGCTCCTA TCTATCACTG AGTCGGCCTG
  GCCCCCGTCC ATTGAATGTT AATAGATTGC CCAAGTACAG TAAGTACCCT CACTGCTGTA
  Y
  TTTAAGGTAT AAGAATGAAA AGATTCAGAG TTCTATAGGT TGTAGTTTCA ATTTTTTAAA
  ACATGTTTAC AAGACAAGTT AACTCATACC CTGTATCATA TCATTGTTGG CACACGTCTG
  TATTTTAGTG TATTATGTGT TAGCAAAAGA CAAGTTCGAA TAAGAAGAGT TATCTAGTCT
  CTTTCAGTCA GTATTGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61442857	NES16830283	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46510960					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442857	NES16830283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96139520 () rs orientation: forward

Symbol	Name	Function Class
Rr684926	regulatory region 684926	1988 bp distal
Rr684927	regulatory region 684927	848 bp proximal
Rr684928	regulatory region 684928	1286 bp proximal
Rr684929	regulatory region 684929	1539 bp proximal
Rr684930	regulatory region 684930	1829 bp proximal
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1753 bp upstream
Tssr86589	transcription start site region 86589	1230 bp upstream
Tssr86590	transcription start site region 86590	1247 bp upstream
Tssr86591	transcription start site region 86591	1261 bp upstream
Tssr86592	transcription start site region 86592	1324 bp upstream
Tssr86593	transcription start site region 86593	1339 bp upstream
Tssr86594	transcription start site region 86594	1541 bp upstream
Tssr86595	transcription start site region 86595	1779 bp upstream
Tssr86596	transcription start site region 86596	1803 bp upstream