rs46511759 SNP Detail

Summary

• ID
  rs46511759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29981763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGC TAGCAGGCTT CATCAAGTCC
  R
  TGTCTCCCAG CTCTCCTTTG AGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991464	NES16140523	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	A	A	G	A	A		A	A	A	A		A
ss322132957	CHEV_7_31067357	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46511759					SNP	A	G	G	G	G	A	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991464	NES16140523	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29981763 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	1318 bp distal
Rr400235	regulatory region 400235	1771 bp downstream
Rr644767	regulatory region 644767	1441 bp distal
Rr644768	regulatory region 644768	916 bp distal
Rr644769	regulatory region 644769	472 bp distal
Rr644770	regulatory region 644770	81 bp distal
Tssr65669	transcription start site region 65669	1754 bp downstream
Tssr71721	transcription start site region 71721	1914 bp upstream
Wdr62	WD repeat domain 62	1919 bp upstream