rs46512277 SNP Detail

Summary

• ID
  rs46512277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91986397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTTTCC AGTGACCAGA
  CTCCCAGTCA GTCTCTAGCC TATACTGGAT TTGAATGAAG AAGAACAAAG GCATCCTACT
  GCTTAAGAGG AATCTGTATC TGAACACCCC AAGCCCCTTC ACCCCACAAC ACACACAAAG
  AGCCCAGCTG CATCTGTGAT GCTGTTAAGT CTCCTAGAGA TGCTTTAAAG TATGCAGTGT
  Y
  AAAACTCTTG AGCTACTTGG TCTTCTTCAT AGATACCTGA TATTTTCATT ACAACATTTA
  AAATATTAAA ACATAAAAAT ATTCACGTTG TTTAAGTACT GTAAATGTCC ACTTTAGTTA
  GTTGATGCAC ACCGGCAATG GGGCATCCTT GGCTCTCACT ACTCTTCCCC CTTCTACTTA
  CCTATCCATT TCCTCTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60764383	NES16407891	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46512277					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60764383	NES16407891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91986397 () rs orientation: forward

Symbol	Name	Function Class
Hdac4	histone deacetylase 4	within coordinates
Rr23700	regulatory region 23700	within coordinates
Rr35319	regulatory region 35319	1405 bp proximal
Rr366965	regulatory region 366965	111 bp upstream
Tssr8116	transcription start site region 8116	260 bp upstream
Tssr8117	transcription start site region 8117	295 bp upstream