rs46512294 SNP Detail

Summary

• ID
  rs46512294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64997615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAG AGATATGTTT GTCTAACTAA
  R
  ACACAAATTC ATAACATATA GCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60745011	NES16383956	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A		A	A		A
ss319746085	CHEV_1_65005030	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46512294					SNP	A	A	G	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60745011	NES16383956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64997615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	1569 bp distal
Gm51627	predicted gene, 51627	within coordinates
Plekhm3	pleckstrin homology domain containing, family M, member 3	1632 bp upstream
Rr412356	regulatory region 412356	1944 bp distal
Rr412357	regulatory region 412357	1643 bp distal
Rr412358	regulatory region 412358	1690 bp distal
Rr412359	regulatory region 412359	1142 bp distal
Tssr11945	transcription start site region 11945	1731 bp upstream
Tssr11946	transcription start site region 11946	1674 bp upstream
Tssr11947	transcription start site region 11947	1638 bp upstream
Tssr11948	transcription start site region 11948	1621 bp upstream