rs46512566 SNP Detail

Summary

• ID
  rs46512566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51371558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACG AAATAACTCG GAATAGTAGG
  Y
  GTATTCACAA AGCTGTGTGG CTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52288578	NES15304602	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46512566					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288578	NES15304602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51371558 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93274	transcription start site region 93274	1744 bp downstream
Tssr93275	transcription start site region 93275	1611 bp downstream
Tssr93276	transcription start site region 93276	1557 bp downstream
Tssr93277	transcription start site region 93277	1509 bp downstream
Tssr93278	transcription start site region 93278	1473 bp downstream
Tssr93279	transcription start site region 93279	1317 bp downstream
Tssr93280	transcription start site region 93280	870 bp downstream
Tssr93281	transcription start site region 93281	822 bp downstream
Tssr93282	transcription start site region 93282	804 bp downstream
Tssr93283	transcription start site region 93283	714 bp downstream
Tssr93284	transcription start site region 93284	346 bp downstream
Tssr93285	transcription start site region 93285	162 bp downstream
Tssr93286	transcription start site region 93286	59 bp downstream
Tssr93287	transcription start site region 93287	295 bp upstream
Tssr93288	transcription start site region 93288	555 bp upstream
Tssr93289	transcription start site region 93289	623 bp upstream
Tssr97556	transcription start site region 97556	951 bp upstream
Tssr97557	transcription start site region 97557	614 bp upstream
Tssr97558	transcription start site region 97558	559 bp downstream
Tssr97559	transcription start site region 97559	1029 bp downstream
Tssr97560	transcription start site region 97560	1125 bp downstream